Bioconductor Pathway Enrichment

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KEGG R offline Pathway Enrichment

updated 5.9 years ago by Gordon Smyth 53k • written 6.3 years ago by omarrafiqued ▴ 50

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Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k

A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…

Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k

The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…

Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k

If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…

Comment: How to do differential expresion across time serise with edgeR? by petergrahamclark ▴ 10

The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaasocissalpc • 0

Just like attending workshops helps you improve skills in a field, playing 8 Ball Pool helps sharpen your strategy and precision. You can d…

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Answer: Converting Probe IDs to HGNC symbols

Converting Probe IDs to HGNC symbols

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